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Pull requests: nf-core/mag

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Pull requests list

Skip fastqc switch
#1057 opened Jun 23, 2026 by jorondo1 Loading…
3 of 11 tasks
Add more resource usage guidance docs size/m
#1055 opened Jun 23, 2026 by jfy133 Member Loading…
11 tasks
3
chore: update nf-core subworkflows + linting fixes
#1054 opened Jun 23, 2026 by dialvarezs Member Loading…
11 tasks
Add DeepMAsED for deep learning evaluation of metagenomic de novo assemblies
#1051 opened Jun 17, 2026 by SkyLexS Loading…
9 of 11 tasks
15
feat: add test_default snapshot
#1042 opened May 27, 2026 by dialvarezs Member Loading…
11 tasks
2
feat: add test_hybrid snapshot
#1029 opened Apr 28, 2026 by dialvarezs Member Loading…
11 tasks
1
17
Add coverm/contig to nf-core/modules
#997 opened Mar 12, 2026 by vinisalazar Contributor Loading…
11 tasks done
43
Migrate to official nf-core bowtie2 modules + use hostile for host removal
#857 opened Aug 28, 2025 by dialvarezs Member • Draft
11 tasks
Replace Bowtie2 custom modules with official nf-core ones
#754 opened Jan 24, 2025 by jfy133 Member • Draft
1 of 15 tasks
5
Add support for generating taxprofiler/funcscan input samplesheets for preprocessed FASTQs/FASTAs
#688 opened Oct 10, 2024 by vagkaratzas • Draft
1 of 11 tasks
1
24
Added ability to auto-create samplesheet for nf-core/phageannotator enhancement New feature or request ready to review
#543 opened Nov 20, 2023 by CarsonJM Contributor • Draft
7 of 10 tasks
@CarsonJM
32
ProTip! What’s not been updated in a month: updated:<2026-05-23.